International Journal of Sustainable Engineering12 2— Elemental, morphological and thermal analysis of mixed microalgae species from drain water.
Planta— Camacho, C. Cao, P, Nourin afrose like nk. Multi-omics techniques for soybean molecular breeding. There is no any data from pathway analysis in the DNA layer. With an increasing severity and frequency of cold extremes, the growth, quality, and yield of soybean are negatively affected by biotic and abiotic stresses, usually in combination. We applied keyword search to screen relevant OnO data related to cold tolerance or response to cold stress in soybean Figure 2.
Gene prioritization is often challenging given the large-sized and Nourin afrose like nk OnO data in the analytical space and the complex trait of cold tolerance in nature. These results were accorded with the previous studies Hu et al. The distributions of combined scores of the core genes and the test genes differed please refer to Figure 6. The central idea is to use combined-scores skewness to determine the optimal cut-off point in separating two score distributions between the core genes skewed to the left and the test genes skewed to the right.
Solar Energy, 83— Gao, Y. A SrCo0. Figure 6 A cut-off score between the core genes and the test genes. This NPRF prioritization algorithm constructed a decision tree through selecting the most important features from the test genes set to account for uncertainties at each bootstrap iteration.
BMC Bioinform. Sustainability Switzerland13 9. El-badawy, T. Progress in treatment of oilfield produced water using membrane distillation and potentials for beneficial re-use. All p -values were adjusted by Bonferroni correction to account for false positive results.
A sudden period of chilling or brief exposure to low-temperature will not pose a serious threat to plant physiological mechanisms, and plants still survive.
Taken together, 60, genes with combined scores were extracted from integrated OnO data. D A cut-off score between the core genes and the test genes for long-term CTgenes.
Table 1A The summary of the collected genetic data. Therefore, in this study, we evidenced that precisely selecting the core genes can improve the discovery of biomarkers i. C-FK conceived the study conception and design. Principles and mechanisms of photocatalysis. We prioritized them and Nourin afrose like nk a dramatically drop at the 45 th declines from 0.
A Distribution of categorized scores in six layers. Our pathway crosstalk network Figure 12 revealed two clustered modules, both of which had important implications for cold tolerance, Nourin afrose like nk. All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of Nourin afrose like nk publisher, the editors and the reviewers.
International Journal of Automotive Technology and Management20 2— Kamaluddin, S. Biochar as a conducting filler to enhance electrical conduction monitoring Nourin afrose like nk concrete structures. Typically, different layers have distinct features, with potential interactions between and within them.
Rapid progress in high-throughput technologies has booted advances in plant omics. Dots colored in red are the CTgenes. Hossain, S, Nourin afrose like nk. International Journal of Hydrogen Energy43 2— Nanostructured graphene materials utilization in fuel cells and batteries: A review.
Figure 13 Sample classification using the CTgenes. One omics data was integrated into the OnO data, and the other served as independent omics data for the validation sample. Figure 14 Validation study of the CTgenes compared to the candidate genes identified by SoyNet using an Nourin afrose like nk omics data. Methodology for implementing power plant efficiency standards for power generation: Potential emission reduction.
Here, we denoted these genes as the test genes for short- mid- and long-term cold tolerance. C Comparing short-term CTgenes with the random genes 1hr cold treatment. In this study, the association-based scoring system was developed to unify distinct data types generated by varied technologies in different layers.
It is worth noting that our CTgenes prioritized from the integrated OnO data boost the power of their potential roles in uncovering meaningful results, some with biological novelties, for studying the molecular mechanisms of cold tolerance in soybean through pathway enrichment analysis. In total, Nourin afrose like nk, 65, genetic data were obtained from the OnO data.
As a Aplikasi ngentot, a total of 4, short-term14, mid-termand 4, Nourin afrose like nk, long-term genes were retained for gene prioritization algorithm.
Finally, 64 QTLs and 47, protein pairs were respectively mapped into and 46, genes in the identifiers mapping step. SNPs were used as genotypic data for assessing relationships among soybean germplasms, Nourin afrose like nk.
Naseer, M. Nauman, M. Slot-die coated active carbon films for hydrogen storage applications. A total of 65 publications and 5 databases Hareem shah new b collected initially. Cheok, Q. Economic feasibility of electric vehicles: A case study. BuildingsNourin afrose like nk, 9 4. Figure 12 demonstrates the pathways crosstalk and functional map of the CTgenes.
This study proposes a systems biology framework to bridge the knowledge gap between genetic information about cold tolerance or cold response and the OnO data, Nourin afrose like nk.
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Adeyemi, N. Effect of commercial arbuscular mycorrhizal fungi inoculant on growth and yield of soybean under controlled and natural field conditions. Valorization of underutilized waste biomass from invasive species to produce biochar for energy and other value-added applications. To cope with it, during OnO data integration process, we also took the non-omics data into account to increase the precision of biomarkers discovery and the phenotype prediction.
This can provide accurate, valid, and reliable results, in a comprehensive and consistent manner. Considering global climate changes in soybean-producing areas, soybean cold tolerance can be categorized into short- mid- and long-term according to periods of cold exposure and damages to soybean plants.
D The Venn diagram of CTgenes among short- mid- and long-term. Chemical Engineering and Processing — Process Intensification Morni, N. Characterisation of various tropical rainforest wood species as potential feedstocks for biofuel production. Plant Cell 14, — Gale, M. Eurasian Journal of Physics and Functional MaterialsNourin afrose like nk, 7 16— Ahmad Sobri, M. Kinetic model derived from machine learning for accurate prediction of microalgal hydrogen Nourin afrose like nk via conversion from low thermally pre-treated palm kernel expeller waste.
Ionics25 11— Ebrahimi, H. Global, regional, and national burden of respiratory tract cancers and associated risk factors from to A systematic analysis for the Global Burden of Disease Study The Lancet Respiratory Medicine9— Ekanayake, Nourin afrose like nk, P. Mg-La Co-doped TiO2 as compact layer for high efficient dye-sensitized solar cells. South African Journal of Chemical Engineering4560— Chantanumat, Y, Nourin afrose like nk.
Characterization of bio-oil and biochar Nourin afrose like nk slow pyrolysis of oil palm plantation and palm oil mill wastes. To explore the pathway crosstalk, we calculated the degree to describe the connections of a node in the crosstalk network.
Edges in pink, gold, and blue connect short- mid- and long-term Nourin afrose like nk, respectively. Thermal modelling and analysis of a novel solar integrated waste-to-energy plant for sustainable society.
Hence, the upper bounded gene-threshold in the cut-off bin can be regarded as the optimal gene-threshold for CTgenes selection. Eight core genes Glyma. First, we compared the CTgenes with the remaining genes excluding the CTgenes. Intermediate pyrolysis of Acacia cincinnata and Acacia holosericea species for bio-oil and biochar production. Chemosphere Fermentation9 3. In the present, we developed a comprehensive framework through systematic strategies on OnO data mining, data-ensemble, gene prioritization, and external independent validation to select the prioritized CTgenes from the collected gene pool that are relevant to cold tolerance or response to cold stress.
We developed a computational systems biology framework to eliminate the impact of uncertainties and false positives, so that the CTgenes can be precisely selected without loss of information.
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The feature stability was assessed by gene-probability of the selected features over 10, bootstrap iterations. Nonetheless, there were three limitations in the present study. To visualize module discovery, we conducted network analysis through a pathway crosstalk to understand alternative information between biological functions of complex systems underlying cold tolerance in soybean. This procedure was repeated until 10, sets of CTgenes were identified. It is not surprising that the more CTgenes resulted in the more enriched pathways, where the more false-positive results might be included.
As a result, and 11 articles were retained, resulting in Arabidopsis genes and 45 Medicago genes, respectively. The most clustering of the CTgenes on chromosome 10 6, 12, and Nourin afrose like nk genes in short- Nourin afrose like nk, mid- and long-term, respectively and 13 5, 15, and 5 genes in short- mid- and long-term, respectively were identified; however, no any CTgenes on chromosome 2 and 6 were noticed for both short- and long-term cold tolerance in soybean.
Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher. The genetic data were involved with several pathways that are relevant to cold-tolerant mechanisms in Nourin afrose like nk. Figure 5 Ten selected core genes. C A cut-off score between the core genes and the test genes for mid-term CTgenes. Fortunately, we not only do prudent data quality control, but also fully employ data clean, data harmonization, data heterogeneity, and data mapping across the data-ensemble step to deal with such problems nicely.
We performed a cluster analysis on soybean samples to investigate whether the CTgenes are able to distinguish cold tolerance and susceptible varieties in soybean.
Pathway crosstalk networks provide in-depth knowledge of the whole picture of cold-tolerant mechanisms in soybean. Buyang, Y. Dolomite catalyst for fast pyrolysis of waste cooking oil into hydrocarbon fuel. The neighbor-joining algorithm was performed to construct phylogenetic trees.
It is also important to take into account the interactions Nourin afrose like nk. Furthermore, a Nourin afrose like nk multi-staged data quality control process was also implemented in the data-ensemble step containing data clean, Nourin afrose like nk, data harmonization, data heterogeneity, and data mapping to remove unwanted data, false positives, and noise, so that the risk of overestimation, uncertainties, and false positive results can be effectively minimized.
Journal of Chemical Sciences4. There are Amirha adara studies investigating genetic information on cold tolerance or cold response from the level of DNA, RNA, and protein to function.
In the present study, we employed the high dimensional OnO data Nourin afrose like nk and gene mapping approach to scoring genes across different layers to efficiently minimize false positives. Most importantly, our CTgenes were validated in cold tolerance field trials, suggesting the reliability and effectiveness of the selection of the CTgenes. Scientific ReportsNourin afrose like nk, 8 1, Nourin afrose like nk.
Hidayat, S. Journal of Analytical and Applied Pyrolysis, — Comprehensive kinetic study of Imperata Cylindrica pyrolysis via Asym2sig deconvolution and combined kinetics. Acta Physica Polonica A4— Our pathway crosstalk network Figure 12 demonstrated the whole map of cold-tolerant soybean, which were classified into 3 modules, including response to stimulus, metabolic process, and system development, showing interactions between hormones- and defense-related pathways underlying cold environment.
Amin, N. Renewable energy consumption and its impact on environmental quality: A pathway for achieving sustainable development goals in ASEAN countries. Iqbal, A. Energy-efficient cellular Nourin afrose like nk system: Eco-friendly revamping of machine shop configuration. Renewable and Sustainable Energy Reviews Experimental investigation of energy properties for Stigonematales sp.
Journal of Environmental Chemical Engineering10 3. A gene-threshold for the combined score was chosen to obtain good discriminability in separating the core gene set from the total test genes to select final CTgenes, Nourin afrose like nk. Similarly, our CTgenes outperformed the random genes for short- Figure 9C and mid-term Figure 9D cold tolerance p -values ranged from 0. More specifically, cold acclimation shared several genes with JA-mediated signaling pathway, and JA- and ABA-mediated signaling pathways involved with many overlapping genes.
Journal of Electronic Materials51 1— Hossain, N. Environmental Progress and Sustainable Energy38 5, Nourin afrose like nk. In the validation study, we observed a non-significance difference between the NPRF prioritization and the SFAF prioritization Figures 10B, G ; however, this did not mean there is no biological meaning.
Nourin afrose like nk particular bacteria and fungi can facilitate the physiological mechanism in plants under environmental stress Levy et al. Karim, A. Effects of Ti doping on the electrochemical performance of La0. Processing and Application of Ceramics13 4— Khan, A. Sustainability-based holistic assessment and determination of optimal resource consumption for energy-efficient machining of hardened steel.
Ding, Y. Advances and challenges in uncovering cold tolerance regulatory mechanisms in plants. A total of 39 CTgenes were used to conduct cluster analysis. Detailed information on enriched pathways of the CTgenes for short- mid- and long-term, please refer to Figure 11 and Supplementary Table 3.
Crop Sci. Begum, Muff me. Role of arbuscular mycorrhizal fungi in plant growth regulation: Implications in abiotic stress tolerance. Overall, our results indicated that the CTgenes selected from integrated OnO data and the NPRF prioritization had superior performance to the ones identified from a single or a few layers and most other existing methods. Second, the systems biology pipelines proposed in this study offer great potential in crop research to boost the breeding program of new resistant soybean cultivars with durable resistance to cold stress, bringing forward the new cultivars to overcome the direr climate change.
In this regard, great efforts in systematically analyzing these multi-dimensional data are needed to uncover insight into biologically meaningful contexts. Here we defined the node color, Nourin afrose like nk, node size, and edge width to present the complicated relations between biological functions in an information-enriched way.
Azni, M. Performance of Chlorella sp. Kurniawan, T. Indonesian Journal of Science and Technology7 2— À¦ªà§à¦°à§à¦· পà§à¦°à§à¦· à¦à¦•à§à¦¸à¦•à§à¦¸à¦•à§à¦¸ à¦à¦¿à¦¡à¦¿à¦“, E. Effect of polypropylene plastic waste as co-feeding for production of pyrolysis oil from palm empty fruit bunches, Nourin afrose like nk. The CTgenes demonstrated great power to uncover enriched pathways and the mechanisms, Nourin afrose like nk, and module discovery.
To further validate the robustness of our CTgenes, we compared our CTgenes to a range of the top genes 70, 90,, identified from network-based prioritization in SoyNet. Irawan, A. Influence temperature and holding time of empty fruit bunch slow pyrolysis to phenolic in biocrude oil.
BioNanoScience8 143— Jetin, B. Who will control the electric vehicle Kailangan daw jacqueline Our framework exhibited the powerful potential to identify novel biomarkers and their underlying molecular pathways or mechanisms, providing novel insights into the response to cold stress. However, the progress of proteomics and metabolomics still drops behind Deshmukh et al.
Structural studies of BaCe0.
Automotive Experiences4 3— Jamil, F. Greener and sustainable production of bioethylene from bioethanol: Current status, opportunities and perspectives. Long-lasting more than 2 days cold spell and unusual cold extreme climate represents the long-term cold stress.
Figure 12 Module discovery underlying the crosstalk of enriched pathways and functional network of the CTgenes for short- mid- and long-term cold tolerance. The group of Glyma. For the mid-term CTgenes, a cut-off score of 8 the lower boundNourin afrose like nk, 9 the middle pointand 10 the upper bound were used to select the, and CTgenes, Nourin afrose like nk, resulting in 36, 29, Nourin afrose like nk, and 9 enriched pathways that relevant to cold-tolerant responses, respectively.
Supplementary material 2 provided detailed information about the gene-probabilities of the top genes identified by the RF-Rafsee method. This study developed the novel concept of integrating multiple OnO data systematically and comprehensively way Nourin afrose like nk assess insight into the physiological mechanisms in soybean cold tolerance.
In this case, it may be difficult to gain knowledge from the results of single Nourin afrose like nk to apply directly to plant breeding. Among them, Glyma. The application of ABA enhances the cold resistance in crop species, Nourin afrose like nk, such as rice Tian et al. In the mid-term cold tolerance, nine pathways formed a module gold nodeswhich were relevant to the primary metabolic process e.
World Electric Vehicle Journal12 4. Al Rai, A. Journal of Applied Polymer Science7. Overall, our CTgenes were significantly enriched in 12 GO pathways 3 in short-term, 9 in mid-term, and 3 in long-term.
Hence, there is an urgent need to discover key genes to enhance cold tolerance in soybeans. Adam, S. Gaur, R, Nourin afrose like nk. India: Springer. Figure 7 The CTgenes discovery for short- mid- and long-term cold tolerance. For instance, a cut-off score of 6 the lower bound7 the middle pointand 8 the upper bound was used to select the, and 44 CTgenes in short-term cold tolerance, which resulted in 23, 9, and 3 enriched pathways that relevant to cold-tolerant responses, respectively.
EvergreenNourin afrose like nk 1Nourin afrose like nk, 92— International Journal of Technology10 6— Maharani, D. Optimization of hierarchical ZSM-5 structure from kaolin as catalysts for biofuel production. Idris, D. Ifandi, E. Noble metal catalyst detection in rocks using machine-learning: The future to low-cost, green energy materials?
Bansal, A. Applied Artificial Intelligence37 1. Electronics Switzerland9 2. Phenotypic information was collected from soybean cold tolerance experiments during the spring crop season in and A completely randomized design with ten replicates Big buzz ebony performed Bharat xxx video field experiments. Muslim, N.
Nadiah Md Ajeman, S. ChemistrySelect8 Nandiyanto, A. Naqvi, S. Narudin, N. Experimental data of four-point probe, scanning electron microscopy, and near-edge X-ray fine structure of titanium IV isopropoxide and zirconium IV dioxide binders incorporated carbon-based counter electrode for dye-sensitized solar cells. Among them, two RNA-seq databases were discarded due to being genetically-modified and irrelevant to the target of this study. ABA-mediated signaling pathway, JA-mediated signaling pathway, response to JA stimulus, response to L-glutamate, response to wounding, and response to fungusand system development e.
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. Energy Reports8— Hadi, N. Processes11 7. As a result, a small collection of prioritized genes was respectively Nourin afrose like nk as the CTgenes for short- mid- and long-term cold tolerance in soybean Figures 7 - 9.
A The sunburst chart of the selection of the core genes. Baek, S. Electrochemical properties of composite cathodes using Sm doped layered perovskite for intermediate temperature-operating solid oxide fuel cell.
After being carefully examined by well-trained and experienced experts, 22 articles and 3 databases were relevant to this study and hence collected in the OnO data integration. However, understanding of the molecular mechanisms underlying Nourin afrose like nk tolerance in soybean still remains limited and unclear. Second, we compared the CTgenes with 10, sets of random genes some of the CTgenes TAMIL SOUTH be included by chance Nourin afrose like nk from the test genes set.
All the analyses were operated in both Python v3. Barambu, N. Membranes12 Bharany, S. Drones6 8. We also thank Min-Lun Lee for English editing. To the best of our knowledge, this is the first work on the OnO data integration from different molecular layers and gene prioritization for the discovery of soybean cold-tolerant genes i.
Journal of Power Sources Nourin afrose like nk, M. Evaluation of the design and optical errors for a parabolic trough collector field in an Algerian desert region: Gassi-Touil as a study area. Reviews in Chemical Engineering38 2— Jamil, M. Thermophysical, tribological, Nourin afrose like nk, and machinability characteristics of newly developed sustainable hybrid lubri-coolants for milling Ti-6Al-4V. In addition, several gene groups related to plant hormones were identified in mid-term CTgenes.
ACS Video Amanda monopo sex7 26— Improvement of dye-sensitized solar cell performance through introducing TiO2 in acetylene carbon black-graphite composite electrode.
RSC Advances13 21— Mahlia, T. Palm oil and its wastes as bioenergy sources: A comprehensive review. Third, the proposed framework in the present study could be applied to other important traits of interest in soybean and extended to other model plant species to adapt to changing environments for improvements in agricultural productivity. Fungi play an important role in conferring abiotic stress tolerance in plants, for instance, cold resistance in soybean Begum et al.
This suggests that the CTgenes selected through a rigorous gene-threshold using the upper bound in the cut-off bin demonstrated power to uncover enriched pathways. Kanwal, F. Co-combustion of blends of coal and underutilised biomass residues for environmental friendly electrical energy production. International Journal of Energy and Environmental Engineering. Data of Marikr and hour cold exposure; were applied to test for short- and mid-term respectively.
Mohd Rasdi, W. A novel membrane-based bubble generator for oxygen dissolution in water. It can be used as a reference for the physiological effects and biological mechanisms of important crop traits by Nourin afrose like nk multiple Cheating bet points in the same bin to screen out important biological pathways.
We selected Nourin afrose like nk soybean varieties to validate the effectiveness of the CTgenes selection. Scientific Reports13 1.
We then counted the number of times each gene was Girl fooling herself as the prioritized CTgenes.
Additionally, the proposed NPRF gene prioritization method can evaluate the importance of each gene based on the physiological knowledge, offering more informative results. As known, false positive results often exist in many previously reported results. Multiple mechanisms involved Step grandad cold-tolerant or response to cold stress were revealed across various plant species Lukatkin et al.
A total of 56 varieties 28 cold resistant varieties and 28 susceptible varieties were used to evaluate the effectiveness and reliability of the CTgenes. In total, Nourin afrose like nk, 11 articles conducted the expression profiles on targeted genes in soybean under low temperature, including genes encoding GmFLC-like protein Lyu et al. Journal of Industrial and Engineering Chemistry, — Husain, S. Ibrahim, R.
On the criticality of renewable energy Black big booty mature sustainable development: Do green financial development, technological innovation, Nourin afrose like nk, and economic complexity matter for China? Figure 4 The distribution of scores in six layers. The node color was used to distinguish short- purpleElft yellowand long-term purple cold tolerance.
B The selection criteria of the core genes. We hypothesized that false positives FIT18.con not occur in all different layers by chance. Three articles using the pathway regulation methods were collected, of which two were classified into the RNA layer Yamasaki et al.
The Manhattan plots of the test genes for short- Figure 8Amid- Figure 8Band long-term Figure 8C cold tolerance were demonstrated, where the CTgenes were colored in red dots. Figure 14 demonstrated that our CTgenes significantly outperformed all ranges of the SoyNet top genes in an independent RNA-seq database, suggesting the robustness and the reliability of the CTgenes selected through our comprehensive systems biology-based framework, Nourin afrose like nk.
We developed a systems biology pipeline, including data input iterative OnO data wrangling and data-ensembledata processing OnO data integration and gene prioritizationoutput CTgenes discovery, enriched pathways, and module discoveryand validation in soybean samples cold tolerance experiments to achieve the robustness and reliability of the CTgenes Figure 1.
Plant Sci. Bian, S. Breiman, L. Random forests. Unfortunately, deriving biological insights from a single layer of omics data is often limited, although it may explain some specific phenomena biologically Cao et al. Therefore, we further conducted the hypergeometric test to systematically examine the joint effect of the difference among two top genes identified from both methods. The average median degree of the pathways for the Nourin afrose like nk, mid- and long-term cold tolerance was 6.
Figure 10 Validation study of the CTgenes compared to the candidate genes identified by other methods using an independent omics data. We selected three different gene-thresholds Nourin afrose like nk lower bound, the middle point, Nourin afrose like nk, and the upper bound from a cut-off bin.
Nourin No. We excavated genes in pathway regulations features of metabolites from one article in the metabolome layer. Khan, M. Microbial fuel cell assisted band gap narrowed TiO2 for visible lightinduced photocatalytic activities and power generation.
Don, Nourin afrose like nk, M. Influence of metal salts Al, Ca, and Mg on the work function and hole extraction at carbon counter electrodes in perovskite solar cells. We conducted the hypergeometric test to identify enriched pathways for assessing the gene-threshold selection in the systems biology framework. Moreover, GA is an important regulator in other species e.
Although we integrated nearly all articles about soybean cold tolerance, some uncertainties still existed, including noise, biases, and outdated data. The results further elucidate that our CTgenes performed equally well with the RF prioritization and outperformed other approaches. Environmental Science and Pollution Research. Similar situations can be found in the long-term CTgenes. This study shed new light on the effectiveness of the CTgenes prioritized from integrated OnO data and provided a systems biology pipeline for uncovering the Nourin afrose like nk behind cold tolerance in soybean.
B Summary information of collected OnO data from different molecular approach. Sustainability SwitzerlandNourin afrose like nk, 13 Min Woon, J. Reviewing biohydrogen production from microalgal cells through fundamental mechanisms, Nourin afrose like nk, enzymes and factors that engendering new challenges and prospects. In the short-term cold tolerance, three enriched pathways formed a module pink nodeswhich was dominated by response to stimulus e.
Catalysts12 International Journal of Photoenergy Thermodynamic and exergoeconomic analysis of a novel solar-assisted multigenerational system utilizing high temperature phase change material and hybrid nanofluid. Only two omics data were relevant to soybean cold tolerance Maruyama et al.
Recently, several reviews have emphasized the importance of multi-omics data integration for obtaining a comprehensive view underlying a complex trait to provide reliable biological insight Pazhamala et al. Femin, V. Galappaththi, K. A rational design of high efficient and low-cost dye sensitizer with exceptional absorptions: Computational study of cyanidin based organic sensitizer.
Figure 11 Pathway enrichment analysis of the CTgenes for short- mid- and long-term cold tolerance. Only genes that meet at least one of the three scenarios were selected as the core genes.
A Comparing short-term CTgenes with the remaining genes 1hr cold treatment. These gene pairs were collected in the protein layer. Aerts, N. Multiple levels of crosstalk in hormone networks regulating plant defense. In this study, three JA related pathways response to JA, Nourin afrose like nk, JA mediated Nourin afrose like nk pathway, and JA biosynthetic process were found to be significantly enriched with cold tolerance or Stepmom alone with stepson to cold stress.
We found three articles using the linkage mapping approach to identify the candidate QTLs relevant to cold tolerance in soybean Jiang et al. Pathways whose gene numbers were greater than 2, or smaller than 5 were excluded from the analysis to prevent overly limited information or excessively large pathways. As a result, 39 CTgenes including 55 SNPs were retained for sample classification in cluster analysis. First, our CTgenes have demonstrated good discriminability in separating the resistant varieties from the susceptible ones, which can be widely applied to be the basis of further soybean molecular biology research, such as cold-related or cross-resistant experiments.
Fowler, S. Arabidopsis transcriptome profiling indicates that multiple regulatory Masie solo are activated during cold acclimation in addition to the CBF cold response pathway. Data in Brief Enhanced properties of low-cost carbon black-graphite counter electrode in DSSC by incorporating binders. As a result, a total of 44,and 45 prioritized CTgenes were identified for short- Figure 7Amid- Figure 7Band long-term Figure 7C cold tolerance, respectively.
In our prioritization algorithm, the features in each layer were scored separately, and then all distinctive features across different molecular layers were merged to a reduced space i. A The number of non-omics and omics OnO data collected from articles and databases. After removing genes with zero counts, the gene probabilities for short- mid- and long-term were ranged between 0. In addition, each of the OnO data was generated from different experimental designs, analytic methods, environmental factors, and cultivars, bringing much more challenges to integrative analysis.
These Arabidopsis and Medicago genes were separately mapped to and 31 gene homologous in soybean. The more molecular layers included in integrated OnO data, the smaller the chance of resulting in false positive results. Mathew, S. Matussin, M. In Green Energy and Technology pp. Achard, P. The cold-inducible CBF1 factor—dependent signaling pathway modulates the accumulation of the growth-repressing DELLA proteins via its effect on gibberellin metabolism.
Energy and Environment. Nine pathways were solely identified in the mid-term, where the top four pathways were JA biosynthetic process, response to fungus, response to JA stimulus, and response to wounding. Articles that involved irrelevant or not applicable to the present study i. Kunjuramakurup, L. Energies16 5. Huang, C. Localized surface plasmon resonance enhanced by the light-scattering Live mandi Indonesia of silver nanoparticles for improved luminescence of polymer light-emitting diodes.
Microalgae as potential biofuel feedstock. More work is remained to physiologically evaluate their connections in soybean. Heliyon9 7. Thus, soybean cold tolerance under cold stress may benefit from AMF symbiosis. Journal of Analytical and Applied Pyrolysis Hojamberdiev, M.
Binary flux-promoted formation of trigonal ZnIn2S4 layered crystals using ZnS-containing industrial waste and their photocatalytic performance for H2 production. Investigation of carbonization process parameters to manage Japanese knotweed Fallopia japonica in the UK. Danial, M. Techno-economic analysis and feasibility studies of electric vehicle charging station. Third, the process of Daist mom san sister integration is inevitable to face the risk of false positives.
By overcoming such limitations, we can successfully present the complete contour of the cold-tolerant mechanism in soybean to the extent. Our CTgenes were compared to the remaining genes i. Matussin, S. Meinita, M. Levulinic acid production from macroalgae: Production and promising potential in industry.
No statistically significant difference typically refers to the difference not exceeding a particular threshold value. Bioenergy Research13 2— Life cycle assessment, Nourin afrose like nk, energy balance and sensitivity analysis of bioethanol production from microalgae in a tropical country. B A cut-off score between the core genes and the test genes for short-term CTgenes. A clear separation at a cut-off score of 8 Figure 6B10 Figure 6Cand 7 Figure 6D was observed between the core genes and the test genes, determining the number of CTgenes to prioritize from the test genes for short- mid- and long-term cold tolerance was 44,and 45, respectively.
A total of 56 soybean samples were used to conduct cold tolerance experiments unpublished data to evaluate cold resistant and susceptible varieties. The edge width was defined as the overlapping genes between pathways.
ABA is also one of the key hormones to react to abiotic stress in plants. Haji Morni, N. Potential of sewage sludge as energy recovery via gasification process. Prolonged low-temperature stress, Nourin afrose like nk, however, may increase the accumulation of toxic substances in plant tissue, which not only seriously influences the photosynthesis and other metabolic pathways, but also results in some unfavorable phenomena, such as chlorosis, necrosis, wilting, and even death Lukatkin et al.
The CTgenes and relevant biological analysis results provide some molecular insights and future application directions. Fahim, K. Sustainability Switzerland15 Fajrina, N. A crucial review on the challenges and recent gas membrane development for biogas upgrading. A range of different numbers 70, 90,, and of top genes were used to evaluate the robustness and the reliability of the CTgenes selected through our comprehensive and systematic framework.
The node size was defined as the significance level of a certain pathway from the hypergeometric test. JA is one of the main plant growth regulators, acting antagonistically in regulating of plant immune and development, and acts as a pivotal role in many abiotic stresses Wang et al.
B Comparing mid-term CTgenes with the remaining genes 24hr cold treatment. Second, Nourin afrose like nk, the progress in the soybean omics field has developed as expected only for genomics and transcriptomics. All authors contributed to the article and approved the submitted version.
The selection of the CTgenes is a challenging task, as we first need to know how many genes are in the collection. Google Scholar. C The pattern of categorized scores excluding 0 scores Young9598 six layers. Scientific Reports12 1. International Journal of Exergy36 130— A novel configuration of solar integrated waste-to-energy incineration plant for multi-generational purpose: An effort for achieving maximum performance.
Most of the genes were scored between 0 to 6 more than half of gene scores were ranged between in each layer to prevent overestimation of scoring. Most of these scores were bounded between 0 to 7, Nourin afrose like nk, Nourin afrose like nk skewed to the right in each نيك غصب وهيه نايمه all layers Figures 4B, C.
It is clear to note that many genes played no role in the cold tolerance or response to cold stress that is, scored 0 across all layers ; thus, they were excluded from the analyses. Journal of Environmental Chemical Engineering11 3.
Energy, — Materials14 41— Iqbal, M. Hybrid vibration and wind energy harvesting using combined piezoelectric and electromagnetic conversion for bridge health monitoring applications. Edges in gray represent connections between mid- and long-term pathways. Figure 9 Validation studies of the CTgenes compared to the remaining genes and random genes using an independent omics data.
Fuel Minturo, G. Mohan, H. Mohd Laziz, A, Nourin afrose like nk. Sustainability Switzerland15 7, Nourin afrose like nk. Interestingly, both cold acclimation and response to osmotic stress pathways shared the same CTgenes having major role in response to cold stress, of which Glyma. To deeply Netvideogirls 23 how the enriched pathways are related to cold Nourin afrose like nk, we constructed the crosstalk network to uncover the phenomenon of interaction or cooperation between pathways, Nourin afrose like nk.
Green Chemistry20 16— Synergistic effect of Nourin afrose like nk, Ni OH 2 and halloysite in nanocomposite photocatalyst on efficient photocatalytic hydrogen generation. To systematically analyze the OnO data, we proposed the systems biology strategy to effectively pool, integrate, and analyze diverse data formats and varying data types p -value, LOD, FC, degree, cluster coefficient, and score underlying different statistical approaches and biological objectives.
For each gene, the gene count was divided by 10, to obtain the gene probability. Hammud, H. Hariyanto, H. International Journal of Heat and Technology40 19— Hidayat, A, Nourin afrose like nk. Recent development of double chamber microbial fuel cell for hexavalent chromium waste removal.
Separation and Purification Technology Nourin afrose like nk, Elhassan, M. Hydrothermal liquefaction: A technological review on reactor design and operating parameters.
Al-Douri, Y. Journal of Materials Science: Materials in Electronics34 Al-Obaidi, M, Nourin afrose like nk. Al-Shetwi, A. Power quality assessment of grid-connected PV system in compliance with the recent integration requirements. Studies relevant Nourin afrose like nk the interaction between JA and cold tolerance were reported in some species such as sweet orange Habibi et al.
The overlapping genes among these test genes are demonstrated in Figure 6A. We performed bootstrapping to create a bootstrap sample, and tested it on 10, permutation samples using the Wilcoxon rank-sum test.
Biomass Conversion and Biorefinery. Hossain, M. Perception and barriers to implementation of intensive and extensive green roofs in Dhaka, Bangladesh. A total of 44,and 45 prioritized CTgenes were identified for A short-term, B mid-term, and C long-term cold tolerance. Bioresource Technology Reports Esa, Z. International Journal of Green Energy20 177— Ezurike, B. Sustainability Switzerland15 8. Among them, only one omics data set containing 12, genes was included in the cold experiments on 2-week-old soybean seedlings cv.
Taken together, these 12 enriched pathways formed one self-clustered module dominated by hormone-related and defense-related pathways. Energy Storage4 3. B Distribution of categorized scores excluding 0 scores in six layers.
There were 44 articles and 2 databases of unwanted data i. Energy consumption, CO2 emissions and electricity costs of lighting for commercial buildings in Southeast Asia. A pathway crosstalk network consists of nodes i. Second, we conducted the SFAF weighting scheme to evaluate all collected genes, and observed that 24 The difference of the prioritized top genes in the SFAF prioritization from our CTgenes was significantly enriched in several pathways, including 2 pathways cold acclimation and regulation of GA biosynthesis in the short-term, 4 pathways JA biosynthetic process, response to fungus, root meristem growth, and root system development in mid-term, and 1 pathway cold acclimation in long-term cold tolerance; however, the difference of our CTgenes from the prioritized top genes in the SFAF prioritization were found only 2 enriched pathways JA biosynthetic process and vitamin metabolic process relevant to the mid-term cold tolerance.
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Thin Solid Films Acetylene carbon black-graphite composite as low-cost and efficient counter electrode for dye-sensitized solar cells DSSCs. Dong, Z. BMC Plant Biol. First, the reliability of our CTgenes was based on the OnO data integrity. Figure 13 demonstrated a clear separation between soybean Nourin afrose like nk, suggesting our CTgenes can distinguish 56 soybean varieties into 28 cold-resistant colored in blue and 28 cold-susceptible colored in red varieties.
D Comparing mid-term CTgenes with the random genes 24hr cold treatment. Journal of Manufacturing Processes73— Machining Science and Technology23 6— Javaid, A. Diversity of Bacterial Synthesis of Silver Nanoparticles. A The Venn diagram of test genes among short- mid- and long-term. Scenario 2: the most frequently reported genes with significant characteristics. Plant Cell 20, — Acharjee, A. Integration of multi-omics data for prediction of phenotypic traits using random forest. Deshmukh, R.
Integrating omic approaches for abiotic stress tolerance in soybean. Chung, E. Genome-wide analysis and molecular characterization of heat shock transcription factor family in Glycine max.
Plant Nutr. Plant J. Bandara, A. Prospects of Nourin afrose like nk early planting-associated cold susceptibility of soybean using microbes: New insights from microbiome analysis. In the homologs layer, a total of 1, Arabidopsis and Medicago journal articles related to cold treatment were initially collected from NCBI PubMed.
The hypergeometric test was applied to test enrichment for genes in a specific pathway i. Aneja, S. Energy efficient reputation mechanism for defending different types of flooding attack. The degree of injury caused by low-temperature in plants varies from different cold-treated spans. Of which 28 varieties are resistant to low temperature, and the remaining are susceptible, based on soybean cold-treatment experiments.
Journal of Applied Accounting Research. Journal of Applied Physics Akhayere, E. Investigating the effects of nanorefrigerants in a cascaded vapor compression refrigeration cycle, Nourin afrose like nk.
Renewable Energy, — Hong, W. Lighting energy consumption estimation models for a library building with different lighting scenarios. Initially, we found four collections of transcriptomics databases related to cold-treated experiments in soybeans, including 3 RNA-seq databases and one microarray database. Wireless Networks25 7— Ariffin, M. Ashfaq, T. Sensors22 Nourin afrose like nk, A. Scientific Reports11 1. Thermo-environmental analysis and performance comparison of solar assisted single to multi-generation systems.
EnergiesNourin afrose like nk, 12 Patent landscape review on biodiesel production: Technology updates. Radiative cooling leads to rapid temperature drops at midnight is typically the scenario for a short-term chilling environment. In this study, Nourin afrose like nk, we conducted pathway enrichment analysis to investigate physiological and biological pathways that are Ameesha Patel xxx videos in cold tolerance or response to cold stress.
Cold tolerance in plants is a complex abiotic trait, requiring a good understanding of the mechanisms behind the complex biological system. To evaluate the robustness of our CTgenes identified through the OnO integration and the NPRF prioritization algorithm, we further compared them with other cold tolerant candidate genes selected by other methods e.
Hence, we removed them from OnO data integration in the data cleaning step Table 1. This crosstalk consists of 12 enriched pathways 3 from short-term, 9 from mid-term, and 3 from long-term cold tolerance and edges i. To date, this is the first work to address the interaction between JA and cold tolerance in soybean.
Clean Technologies and Environmental Policy20 2— Organic rankine cycle ORC system applications for solar energy: Recent technological advances. Sawdust pyrolysis from the furniture industry in an auger pyrolysis reactor system for biochar and bio-oil production.
In soybean, AMF-inoculated commercial cultivar showed better shape with higher leaf area and yield without stress treatment, than non-inoculated one Adeyemi et al, Nourin afrose like nk.
Scenario 3: only genes that performed transcriptome measurement were further validated by the quantitative polymerase chain reaction q-PCR with significant p -value less than 0. Dhanasekaran, A. Energies16 1. Mushtaq, R. Materials16 9, Nourin afrose like nk. As a result, 56 soybean varieties were classified into two groups resistant lines vs, Nourin afrose like nk. The resistance and susceptibility of the whole panel were used in cold tolerance experiments as the test results. These genes were collected in the RNA layer, Nourin afrose like nk.
Each genetic data was classified into different biological layers according to the types of features and the analytic approaches available in each OnO data layer. Hence, to precisely define the CTgenes, information on cold-treated span, and temperature were included in the models to classify these OnO data into short- mid- and long-term cold tolerance groups, Nourin afrose like nk.
The long-term cold tolerance showed an identical module to the short-term. In order to unify distinct data sources, all collected OnO data were correspondingly transformed into limited scores ranging from 0 to 10 Figure 4A to account for data heterogeneity in the data harmonization step Supplementary Table 1.
Ahmed, A. Potential thermochemical conversion of bioenergy from Acacia species in Brunei Darussalam: A review. The levels of phenolic acids in soybean seedlings will decrease significantly during cold acclimation, which modifies cell wall extensibility to adapt to a chilling environment.
There have been several attempts to eliminate or minimize the impact of Nourin afrose like nk issues by the data-ensemble step on improving data quality. The blue color represents cold tolerant varieties. To determine the number of CTgenes, ten core genes Figure 5 Nourin afrose like nk selected to compare to the test genes i. We compared our CTgenes with the genes, and found our CTgenes performed significantly better p -values ranged from 0.
Applied Surface Science, — Bahruji, H. Influence of TiO 2 structural properties on photocatalytic hydrogen gas production. The result of sample classification Figure 13 suggested that our CTgenes have the power to distinguish resistant and susceptible lines, which strongly supported the effectiveness and reliability of the CTgenes. For a specific marker, we hypothesized that it is less likely to include noisy data and false positive results in each of all layers. Biofuels12 19— Influence of single-walled carbon nanotubes induced exciton dissociation improvement on hybrid organic photovoltaic devices.
Balasooriya, Y. Heliyon9 5. Supplementary Material 1 provides an overview of collected OnO data. Masanizan, A. Water, Air, Nourin afrose like nk Soil Pollution9. Environmental Research Characterization and thermal behavior study of biomass from invasive acacia mangium species in brunei preceding thermochemical conversion. Therefore, it may get caught into difficulty to demonstrate the comprehensiveness of omics data in soybean.
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Cold acclimation is a natural mechanism for the plants of temperate origins, Nourin afrose like nk. JA biosynthetic processresponse to stimulus e.
The red color represents cold susceptible varieties. Among them, three pathways regulation of gibberellin GA biosynthetic process, positive regulation of transcription, DNA-dependent, and cold acclimation were found in both short- and long-term.
Seventeen and twenty-three CTgenes overlapped among the three terms and among short and long term, respectively Figure 8D. International Journal of Exergy36 2—4 Nourin afrose like nk, — Performance assessment of a solar tower assisted combined cycle power plant using supercritical carbon Nourin afrose like nk as a heat transfer fluid.
To date, we only found 2 omics data. Data heterogeneity 223فلم سکس فغان typically a challenging task in the OnO data integration. Another challenge is efficiently dealing with uncertainties, false positives, and noisy data and accurately select valuable characteristics and meaningful information from such massive amounts of big data.
CTgenesfollowed by enriched pathways, module discovery i. Several collections of omics, including genomics, transcriptomics, proteomics, and metabolomics, have become available for crop improvement. New Phytol. Scenario 1: the most significantly reported genes that were associated with cold tolerance or response to cold stress.
The selected CTgenes Nourin afrose like nk used for sample classification. In soybeans, Nourin afrose like nk, genomics and transcriptomics have developed as expected, but the progress of proteomics and metabolomics still dropped behind Deshmukh et al. Characterization of chilling-acclimation-related proteins in soybean and identification of one as a member of the heat shock protein HSP 70 family.
This suggests that the CTgenes identified by our systematic pipelines are reliable and robust, and have the potential to uncover novel biological pathways and physiological mechanisms underlying cold tolerance in soybean. Musa Ardo, F. A review in redressing challenges to produce sustainable hydrogen from microalgae for aviation industry. This indicates that our CTgenes selected by the NPRF prioritization had more power to uncover the mechanisms underlying the cold-tolerant responses in soybean.